(DOC 7 MB) Additional file 3: Figure S2: Representative 2-DE gel

(DOC 7 MB) Additional file 3: Figure S2: Representative 2-DE gel of proteins extracted from the plant cane soil. Spot numbers correspond to numbers used in Additional file 4: Table S2. (DOC 3 MB) LBH589 mw Additional file 4: Table S2: Soil proteins identified by MALDI TOF-TOF MS. (DOC 227 KB) Additional file 5: Figure S3: Proposed metabolic model for rhizosphere soil proteins as inferred by metaproteomic data. Identification numbers (E.C.-.-.-.-.) refer to the identified proteins. Blue Upward

arrows indicate the up-regulated proteins and downward arrows show the down-regulated proteins. EMP: Embden-Meyerhof pathway; TCA: tricarboxylic acid cycle; GAC: glyoxylic acid cycle; PPP: pentose phosphate pathway. (DOC 382 KB) References 1. Crane DR Jr, Spreen TH: A model of the stubble replacement decision for Florida sugarcane growers. South J Agr Econ 1980, 12:55–63. 2. Shukla SK, Yadav RL, Suman A, Singh PN: Improving rhizospheric environment and sugarcane ratoon yield through bioagents amended farm yard manure in udic ustochrept soil. Soil Till Res 2008, 99:158–168.CrossRef 3. Lin WX, Chen T, Zhou MM: New dimensions in agroecology. Chinese Journal of Eco-Agriculture 2012, 20:253–264.CrossRef 4. Garside AL, Smith MA, Chapman LS, Hurney AP, Magarey RC: MK-2206 research buy The yield plateau in the Australian sugar industry: 1970–1990. In Intensive sugarcane production, meeting

the challenges beyond 2000. Edited by: Keating BA, Wilson JR. Wallingford: CAB International; 1997:103–124. 5. Gascho GJ, Ruelke OC, West SH: Residual effect of germination temperature in sugarcane. Crop Sci 1973, 13:274–276.CrossRef 6. Magarey RC: Microbiological aspects PAK5 of sugarcane yield decline. Aust J Agr Res 1996, 47:307–322.CrossRef 7. Pankhurst CE, Magarey RC, Stirling GR, Blair BL, Bell MJ, Garside AL: Management practices to improve soil health and Combretastatin A4 supplier reduce the effects of detrimental soil biota associated with yield decline of

sugarcane in Queensland. Soil Till Res 2003, 72:125–137.CrossRef 8. Pankhurst CE, Blair BL, Magarey RC, Stirling GR, Bell MJ, Garside AL: Effect of rotation breaks and organic matter amendments on the capacity of soils to develop biological suppression towards soil organisms associated with yield decline of sugarcane. Appl Soil Ecol 2005, 28:271–282.CrossRef 9. Stirling GR, Blair BL, Pattemore JA, Garside AL, Bell MJ: Changes in nematode populations on sugarcane following fallow, fumigation and crop rotation, and implications for the role of nematodes in yield decline. Australas Plant Path 2001, 30:323–335.CrossRef 10. Marschner P: Plant-microbe interactions in the rhizosphere and nutrient cycling. In Nutrient cycling in terrestrial ecosystems. Volume 10. Edited by: Marschner P, Rengel Z. Berlin: Springer; 2007:159–182.CrossRef 11. Pini F, Frascella A, Santopolo L, Bazzicalupo M, Biondi EG, Scotti C, Mengoni A: Exploring the plant-associated bacterial communities in Medicago sativa L.

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